2.7 KASUTATUD KIRJANDUS 

Mikrobioloogia juhendites kasutatud kirjandusallikad 

Anaerobic and microaerophilic – systems for creating modified atmospheres. Rapid Microbiology. https://www.rapidmicrobiology.com/test-method/modified-atmospheresystems-for-the-growth-of-fastidious-microorganisms (14.07.2024).

Aryal, S. (2024). Streak plate method: principle, types, methods, uses. Microbe Notes. https://microbenotes.com/streak-plate-method-principle-methods-significance-limitations/#5-semi-quantitative-streaking (14.07.2024).

BactoSonic. Bandelin. https://bandelin.com/en/products/lab/bactosonic/ (21.07.2024).

BioMérieux. (i.a b). API® Candida. Tootjajuhend. 

BioMérieux. (i.a a). API® 20 E. Tootjajuhend. 

BioMérieux. (i.a c). API® Staph. Tootjajuhend. 

BioMérieux. (i.a). API® Staph. Tootjajuhend. 

BioMérieux SA. (2011). ChromID™ C. difficile agar (CDIF) Chromogenic medium for the detection and identification of Clostridium difficile. https://www.mediray.co.nz/media/15762/om_biomerieux_reagents_ot-43871_package_insert-43871.pdf (12.01.2021). 

Biopsia ja muu koematerjal. (2024). Proovivõtujuhendid. Terviseameti rahvatervise labori nakkushaiguste labor. 

Blood agar base, Thermo Fisher Scientific  http://www.oxoid.com/UK/blue/prod_detail/prod_detail.asp?pr=CM0055 (27.05.2021) 

Cappuccino, J. G., Sherman, N. (2002). Microbiology: a laboratory manual 6th ed. Pearson Education, Inc.

Carroll, K.C., Pfaller, M.A., Landry, M.L., McAdam, A.J., Patel, R., Richter, S.S., Warnock, D.W. (2019). Manual of Clinical Microbiology 12th edition. Washington: ASM Press. 309, 319–320. 

Chess, B. (2009). Laboratory Applications in Microbiology: A Case Study Approach. McGraw-Hill 

Esmaskülvid, inkubatsioon JÜLMI-7.1.2.2. (2023). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond. 

Esmaskülvide külvitehnika JÜLMI-7.1.2.1. (2021). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond.

Evangelopoulos, D.S., Stathopoulos, I.P., Morassi, G.P., Koufos, S., Albarni, A., Karampinas, P.K., Stylianakis, A., Kohl, S., Pneumaticos, S., Vlamis, J. (2013). Sonication: a valuable technique for diagnosis and treatment of periprosthetic joint infections. The Scientific World Journal, 2013(1): 1–5. 

Gateau, C., Couturier, J., Coia, J., Barbut, F. (2017). How to: diagnose infection caused by Clostridium difficile. Clinical Microbiology and Infection, 24(5): 463–468.  

Goudarzi, M., Seyedjavadi, S. S., Goudarzi, H., Aghdam, E. M., Nazeri, S. (2014). Clostridium difficile Infection: Epidemiology, Pathogenesis, Risk Factors, and Therapeutic Options. Scientifica, 2014(2): 1–9. 

Gornostajeva, A., Melnik, D., Ovtšerenko, A. (2024). Esmaskülvid uriinist, roojast, rögast ja transportsöötmega katsutisse võetavatest materjalidest. (Lõputöö, Tartu Tervishoiu Kõrgkool). RIKSWEB: https://nooruse.webriks.ee/index.asp?action=104&tid=18678&qs=3080941911311588618#mt-0

Imen, B. S., Ridha, M., Mahjoub, A. (2012). Laboratory Typing Methods for Diagnostic of Salmonella Strains, the “Old” Organism That Continued Challenges. Raamatus: Mahmoud, B., S., M. Salmonella – A Dangerous Foodborne Pathogen. InTechOpen. https://www.intechopen.com/books/salmonella-a-dangerous-foodborne-pathogen/laboratory-typing-methods-for-diagnostic-of-salmonella-strains-the-old-organism-that-continued-chall (15.11.17) doi: 10.5772/1308

Inoculation of culture media for bacteriology. (2017). UK Standards for Microbiology Investigations. Public Health England. Ivanova, M. (2016). Gram-positiivse mikrofloora identifitseerimine. Ida-Tallinna Keskhaigla mikrobioloogia käsiraamat; (1): 2–12.

Investigation of blood cultures for organisms other than Mycobacterium species. (2019). UK Standards for Microbiology Investigations. Public Health England. 

Investigation of tissue and biopsies from deep-seated sites and organs. (2018). UK Standards for Microbiology Investigations. Public Health England. 

Hektoen eteric agar, Thermo Fisher Scientific  http://www.oxoid.com/UK/blue/prod_detail/prod_detail.asp?pr=CM0419&c=UK&lang=EN 

Kateete, D. P., Kimani, C. N., Katabazi, F. A., Okeng, A., Okee, M. S., Nanteza, A., Joloba, M. L., Najjuka, F. C. (2010). Identification of Staphylococcus aureus: DNase and Mannitol salt agar improve the efficiency of the tube coagulase test. Annals of Clinical Microbiology and Antimicrobials; (9): 23. 

Kirs, K. (2016). Mikrobioloogilised uuringud soolenakkuste tekitajatele. Lääne-Tallinna Haigla, mikrobioloogia labor. Tallinn.

Kliiniliste materjalide uurimine eelneva sonikatsiooniga JÜLMI-7.1.3.26. (2022). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond. 

Kruusamägi, I., Kallas, L. (2025). Õppefilm kateetritüki, BACTEC pudeli vere ja koematerjali külviviisi õppimiseks. (Lõputöö, Tartu Tervishoiu Kõrgkool). RIKSWEB:  https://nooruse.webriks.ee/index.asp?action=300&qs=4379140368499413696

Kulli, S. (2022). Clostridium difficile laboratoorse tuvastamise juhend Tartu Tervishoiu Kõrgkooli mikrobioloogia laboris kasutamiseks. (Lõputöö: Tartu Tervishoiu Kõrgkool). RIKSWEB: https://nooruse.webriks.ee/index.asp?action=104&tid=17888&qs=1332682038311588618#mt-0

Laaring, Ü. (2014). Uroinfektsioonide mikrobioloogiline diagnostika.  

Laaring, Ü. (2016). Rooja mikrobioloogiline uurimine. Metoodiline juhend. Pärnu Haigla 

Laboratory procedures for diagnosis and typing of human Clostridium difficile infection. (2018). European Centre for Disease Prevention and Control. https://www.ecdc.europa.eu/sites/portal/files/documents/SOPs-Clostridium-difficile-diagnosis-and-typing.pdf (21.12.2020).

Liigese proteesiinfektsioonide mikrobioloogiline diagnostika JÜLMI-7.1.3.22. (2023). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond. 

Maki, D.G., Weise, C.E., Sarafin, H.W. (1977). A semiquantitative culture method for identifying intravenous-catheter-related infection. New England Journal of Medicine, 296(23): 1305–1309.

Mannitol Salt Agar, Thermo Fisher Scientific  https://www.thermofisher.com/order/catalog/product/PO0151A#/PO0151A (27.05.2021).

Mansilla, C.A., Martínez-Alarcón, J., Ahufinger, I.G., Ramírez, M.G. (2019). Microbiological diagnosis of catheter-related infections. Enfermedades Infecciosas y Microbiología Clínica, 37(10): 668–672. 

Microbeonline, Bile Esculin Aagar https://microbeonline.com/bile-esculin-test-enterococcus-species-principle-procedure-results/

Micobeonline, CLED Agar: Composition, Uses, Colony Characteristics https://microbeonline.com/cled-agar-composition-uses-typical-colony-characteristics/  

Mikoleit, M., L. (2010). Isolation of Salmonella and Shigella from Faecal Specimens.  

Modified Semisold Rappaport Vassiliadis. Department of veterinary Diseae Biology. https://atlas.sund.ku.dk/microatlas/food/plating_media/MSRV/ (10.09.2023) 

Murti, G. LM of epithelial cells from the human mouth. ScinecePhoto. https//www.sciencephoto.com/media/309247/view/lm-of-epithelial-cells-from-the-human-mouth (04.01.2024) 

Laboratory Protocol. WHO Global Foodborne Infections Network, USA. http://antimicrobialresistance.dk/CustomerData/Files/Folders/6-pdf-protocols/62_gfn-stool-culture-nov2010.pdf (11.10.17) 

Nahimana, I., Francioli, P., Blanc, D. S. (2006). Evaluation of three chromogenic media (MRSA-ID, MRSA-Select and CHROMagar MRSA) and ORSAB for surveillance cultures of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection; 12 (12): 1168–1174. 

Nishihara, Y., Nakamura T., Suzuki Y., Kasahara, K. (2023). Sputum Gram stain of hypervirulent Klebsiella pneumoniae. Journal og General and Family Medicine. 24 (5):315-316. 

Oxacillin resistance screening agar base, Thermo Fisher Scientific http://www.oxoid.com/uk/blue/prod_detail/prod_detail.asp?pr=SR0195&org=&c=uk&lang=EN (27.05.2021) 

Pirožkova, L., Ivanova, M. (i.a). Aeroobide ja seente külvid uriinist. http://www.itk.ee/upload/files/Kesklabori-kasiraamat/MB/Aeroobide-ja-seente-kulvid-uriinist.pdf. (10.01.2017)

Platonova, C. (2018). Staphylococcus SPP. samastamise juhend Tartu Tervishoiu Kõrgkooli mikrobioloogia labori kasutamiseks. (Lõputöö, Tartu Tervishoiu Kõrgkool). RIKSWEB: https://nooruse.webriks.ee/index.asp?action=104&tid=14576&qs=1820363427311588618#mt-7

R-Biopharm AG. RIDA®QUICK Clostridium difficile Toxin A/B. https://clinical.r-biopharm.com/wp-content/uploads/2012/06/n0803_ridaquick-clostridium-difficile-toxin-ab_2020-08-10_en.pdf (11.04.2022).  

R-Biopharm AG. RIDA®QUICK Clostridium difficile GDH. https://clinical.r-biopharm.com/wp-content/uploads/2013/06/N0703_RIDAQUICK-Clostridium-difficile-GDH_13-04-26_EN.pdf (11.04.2022). 

Roh, K.H., Kim, J.Y., Kim, H.N., Lee, H.J., Sohn, J.W., Kim, M.J., Cho, Y., Kim, Y.K., Lee, C.K. (2012). Evaluation of BACTEC Plus aerobic and anaerobic blood culture bottles and BacT/Alert FAN aerobic and anaerobic blood culture bottles for the detection of bacteremia in ICU patients. Diagnostic Microbiology and Infectious Disease, 73(3): 239–242. 

Sedlacek, I., Petras, P., Pliskova-Pakrova, E., Skapova, T., Jancova, J., Jezek, P. (2008). 

Selenite broth base, Thermo Fisher Scientific  http://www.oxoid.com/UK/blue/prod_detail/prod_detail.asp?pr=CM0395&org=124&c=UK&lang=EN (27.05.2021)

Sepp, H. (2017). Uriini mikrobioloogilise analüüsi juhend Tartu Tervishoiu Kõrgkooli mikrobioloogia laboris kasutamiseks. (Lõputöö, Tartu Tervishoiu Kõrgkool). RIKSWEB: https://nooruse.webriks.ee/index.asp?action=104&tid=12958&qs=1467019458311588618#mt-7

Shahin, M., Jamal, W., Verghese, T., Rotimi, V.O. (2003). Comparative evaluation of anoxomat and conventional anaerobic GasPak jar systems for the isolation of anaerobic bacteria. Medical Principles and Practice, 12(2): 81–86. Sigma Aldrich. (2013). Gram Staining Kit (Bacteria Staining Kit according to Gram). Manual.

Sherertz, R.J., Raad, I.I., Belani, A., Koo, L.C., Rand, K.H., Pickett, D.L., Straub, S.A., Fauerbach, L.L. (1990). Three-year experience with sonicated vascular catheter cultures in a clinical microbiology laboratory. Journal of Clinical Microbiology, 28(1): 76–82.

Slobbe, L., Barzouhi, A.E., Boersma, E., Rijnders, B.J.A. (2009). Comparison of the roll plate method to the sonication method to diagnose catheter colonization and bacteremia in patients with long-term tunnelled catheters: a randomized prospective study. Journal of Clinical Microbiology, 47(4): 885–888.

Smith, K.P. (2018). Predictive value of blood culture time to positivity. American Society for Microbiology. https://asm.org/articles/2018/november/predictive-value-of-blood-culture-timeto-positivi (30.10.2024). 

Stepanenkova, M. (2018). Juhend Salmonella spp. isoleerimiseks ja samastamiseks kliinilisest materjalist. (Lõputöö, Tartu Tervishoiu Kõrgkool). RIKSWEB: https://nooruse.webriks.ee/index.asp?action=104&tid=14469&qs=4198135761311588618#mt-7

Tankeshwar, A. Bactec Automated Blood Culture System. Microbe Online. https://microbeonline.com/bactec-automated-blood-culture-system/ (20.10.2023). 

Terrier, Z.C.M., Simonet, L.M., Bichard, P., Frossard, L.J. (2014)  Recurrent Clostridium difficile infections: The importance of the intestinal microbiota. World Journal of Gastroenterology, 20(23): 7416-7423. 

Trampuz, A., Piper, K.E., Jacobson, M.J., Hanssen, A.D., Unni, K.K., Osmon, D.R., Mandrekar, J.N., Cockerill, F.R., Steckelberg, J.M., Greenleaf, J.F., Patel, R. (2007). Sonication of removed hip and knee prostheses for diagnosis of infection. The New England Journal of Medicine, 357(7): 654–663. 

Uriiniproovi võtmine suletud vaakumsüsteemiga https://www.itk.ee/patsiendile/patsiendi-infomaterjalid/uuringud/uriiniproovi-kogumine-suletud-vaakumsusteemiga (10.01.2017).

Veenikateetri mikrobioloogiline uurimine JÜLMI-7.1.3.21. (2022). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond. Vere mikrobioloogiline diagnostika JÜLMI-7.1.3.2. (2022). Tartu Ülikooli Kliinikumi Ühendlabori mikrobioloogia osakond. 

XLD agar, Thermo Fisher Scientific  https://www.fishersci.co.uk/shop/products/oxoid-prepared-xld-agar-plated-media/11914182 (27.05.2021).

Xu, Y., Moser, C., Al-Soud, W.A., Sørensen, S., Høiby, N., Nielsen, P.H., Thomsen, T.R. (2012). Culture dependent and independent investigations of microbial diversity on urinary catheters. Journal of Clinical Microbiology, 50(12): 3901–3908.